Biocmask Simple Example Summarized Experiment

A small data SummarizedExperiment Object of 20 observations, 5 rows and 4 columns.

Usage

se_simple

Format

`se_simple`

assays

counts: sampled data points between 1:20
logcounts: log transform of counts

rowData/.features

gene: fake gene name
length: fake gene length
direction: fake strand

colData/.samples

sample: fake sample name
condition: control or drug treatment

Value

a SummarizedExperiment object

Examples

SummarizedExperiment::assays(se_simple)
#> List of length 2
#> names(2): counts logcounts
SummarizedExperiment::rowData(se_simple)
#> DataFrame with 5 rows and 3 columns
#>              gene    length   direction
#>       <character> <integer> <character>
#> row_1          g1         1           -
#> row_2          g2        24           +
#> row_3          g3        60           +
#> row_4          g4        39           -
#> row_5          g5        37           +
SummarizedExperiment::colData(se_simple)
#> DataFrame with 4 rows and 2 columns
#>            sample   condition
#>       <character> <character>
#> col_1          s1       cntrl
#> col_2          s2       cntrl
#> col_3          s3        drug
#> col_4          s4        drug