Package index • biocmask

All functions

BiocmaskManager biocmask_manager: biocmask Data Mask Manager

arrange(<SummarizedExperiment>): arrange rows or columns

as.data.frame(<SummarizedExperiment>): create data.frame

cols() rows() col_ctx() row_ctx() assay_ctx(): biocmask contexts

vec_phantom() biocmask_pillar_format() show_tidy() use_show_tidy() use_show_default(): Printing within tibble with S4 objects

biocmask: biocmask Data Mask Object

biocmask_quos(): biocmask quosures

.assays .assays_asis .rows .rows_asis .cols .cols_asis: contextual biocmask pronouns

filter(<SummarizedExperiment>): Filter SummarizedExperiment

group_by(<SummarizedExperiment>) ungroup(<SummarizedExperiment>): apply groups to SummarizedExperiments

group_data(<SummarizedExperiment>): get grouping data

mutate(<SummarizedExperiment>): Mutate a SummarizedExperiment object

new_biocmask_manager(): New Biocmask

pull(<SummarizedExperiment>): extract data from object

se_simple: Biocmask Simple Example Summarized Experiment

select(<SummarizedExperiment>): select assays, rowData, and colData names

summarise(<SummarizedExperiment>): Summarize SummarizedExperiment

vec_recycle(): Recycle a vector

vec_rep() vec_rep_each(): replicate a vector

vec_slice(): Get observations of a vector

class_vctrs class_s4_vctrs class_DF: S7 classes for vctrs and S4 Vectors