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plyxp utilizes its own version of rlang::.data pronouns. These may be used to gain access to other evaluation contexts for a managed set of data-masks.

Similar to rlang::.data, plyxp::.assays and other exported pronouns are exported to pass R CMD Checks. When using a plyxp within your package, import the associated pronoun from plyxp but only use the fully unqualified name, .assays, .assays_asis, etc.

Usage

.assays

.assays_asis

.rows

.rows_asis

.cols

.cols_asis

Format

An object of class NULL of length 0.

An object of class NULL of length 0.

An object of class NULL of length 0.

An object of class NULL of length 0.

An object of class NULL of length 0.

An object of class NULL of length 0.

Value

access to specific values behind the rlang pronoun

Examples

mutate(se_simple,
       # access via pronoun
       rows(sum = rowSums(.assays_asis$counts)),
       cols(sum = vapply(.assays$counts, sum, numeric(1))))
#> # A SummarizedExperiment-tibble Abstraction: 5 × 4
#>     .features .samples | counts logcounts | gene  length direction   sum |
#>     <chr>     <chr>    |  <int>     <dbl> | <chr>  <int> <chr>     <dbl> |
#>   1 row_1     col_1    |     14      2.64 | g1         1 -            38 |
#>   2 row_2     col_1    |     19      2.94 | g2        24 +            26 |
#>   3 row_3     col_1    |     16      2.77 | g3        60 +            57 |
#>   4 row_4     col_1    |     11      2.40 | g4        39 -            41 |
#>   5 row_5     col_1    |     18      2.89 | g5        37 +            48 |
#>                                                                  
#> n-4 row_1     col_4    |      9      2.20 | g1         1 -            38 |
#> n-3 row_2     col_4    |      4      1.39 | g2        24 +            26 |
#> n-2 row_3     col_4    |     20      3.00 | g3        60 +            57 |
#> n-1 row_4     col_4    |      3      1.10 | g4        39 -            41 |
#> n   row_5     col_4    |      5      1.61 | g5        37 +            48 |
#> # ℹ n = 20
#> # ℹ 3 more variables: sample <chr>, condition <chr>, sum <dbl>