Skip to contents
-
se() `se<-`() assays(<PlySummarizedExperiment>) `assays<-`(<PlySummarizedExperiment>,<list>) `assays<-`(<PlySummarizedExperiment>,<SimpleList>) assay(<PlySummarizedExperiment>,<missing>) assay(<PlySummarizedExperiment>,<numeric>) assay(<PlySummarizedExperiment>,<character>) `assay<-`(<PlySummarizedExperiment>,<missing>) `assay<-`(<PlySummarizedExperiment>,<numeric>) `assay<-`(<PlySummarizedExperiment>,<character>) rowData(<PlySummarizedExperiment>) `rowData<-`(<PlySummarizedExperiment>) colData(<PlySummarizedExperiment>) `colData<-`(<PlySummarizedExperiment>,<DataFrame>) `colData<-`(<PlySummarizedExperiment>,<NULL>)
- PlySummarizedExperiment Methods
-
arrange(<PlySummarizedExperiment>)
- arrange rows or columns of PlySummarizedExperiment
-
as.data.frame(<PlySummarizedExperiment>)
- create data.frame
-
.assays .assays_asis .rows .rows_asis .cols .cols_asis
- contextual plyxp pronouns
-
filter(<PlySummarizedExperiment>)
- filter PlySummarizedExperiment
-
group_by(<PlySummarizedExperiment>) ungroup(<PlySummarizedExperiment>)
- apply groups to PlySummarizedExperiment
-
group_data(<PlySummarizedExperiment>)
- get grouping data
-
group_vars(<PlySummarizedExperiment>)
- get PlySummarizedExperiment grouping Variables
-
mutate(<PlySummarizedExperiment>)
- Mutate a PlySummarizedExperiment object
-
new_plyxp() PlySummarizedExperiment()
- SummarizedExperiment Shell Object
-
cols() rows() col_ctx() row_ctx() assay_ctx()
- plyxp contexts
-
vec_phantom() plyxp_pillar_format() show_tidy() use_show_tidy() use_show_default()
- Printing within tibble with S4 objects
-
plyxp() plyxp_on()
- Modify SummarizedExperiment Object
-
pull(<PlySummarizedExperiment>)
- extract data from object
-
se_simple
- Plyxp Simple Example Summarized Experiment
-
select(<PlySummarizedExperiment>)
- select assays, rowData, and colData names
-
summarize(<PlySummarizedExperiment>) summarise(<PlySummarizedExperiment>)
- Summarize PlySummarizedExperiment
-
vec_recycle()
- Recycle a vector
-
vec_rep() vec_rep_each()
- replicate a vector
-
vec_slice()
- Get observations of a vector
-
class_vctrs class_s4_vctrs class_DF
- S7 classes for vctrs and S4 Vectors