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se() `se<-`() assays(<PlySummarizedExperiment>) `assays<-`(<PlySummarizedExperiment>,<list>) `assays<-`(<PlySummarizedExperiment>,<SimpleList>) assay(<PlySummarizedExperiment>,<missing>) assay(<PlySummarizedExperiment>,<numeric>) assay(<PlySummarizedExperiment>,<character>) `assay<-`(<PlySummarizedExperiment>,<missing>) `assay<-`(<PlySummarizedExperiment>,<numeric>) `assay<-`(<PlySummarizedExperiment>,<character>) rowData(<PlySummarizedExperiment>) `rowData<-`(<PlySummarizedExperiment>) colData(<PlySummarizedExperiment>) `colData<-`(<PlySummarizedExperiment>,<DataFrame>) `colData<-`(<PlySummarizedExperiment>,<NULL>) metadata(<PlySummarizedExperiment>) `metadata<-`(<PlySummarizedExperiment>) rownames(<PlySummarizedExperiment>) colnames(<PlySummarizedExperiment>) nrow(<PlySummarizedExperiment>) ncol(<PlySummarizedExperiment>) dimnames(<PlySummarizedExperiment>) `dimnames<-`(<PlySummarizedExperiment>,<list>) `dimnames<-`(<PlySummarizedExperiment>,<NULL>)
- PlySummarizedExperiment Methods
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arrange(<PlySummarizedExperiment>)
- arrange rows or columns of PlySummarizedExperiment
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as.data.frame(<PlySummarizedExperiment>)
- create data.frame
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.assays .assays_asis .rows .rows_asis .cols .cols_asis
- contextual plyxp pronouns
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filter(<PlySummarizedExperiment>)
- filter PlySummarizedExperiment
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group_by(<PlySummarizedExperiment>) ungroup(<PlySummarizedExperiment>)
- apply groups to PlySummarizedExperiment
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group_data(<PlySummarizedExperiment>)
- get grouping data
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group_split(<PlySummarizedExperiment>)
- Split a PlySummarizedExperiment based on groups
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group_vars(<PlySummarizedExperiment>)
- get PlySummarizedExperiment grouping Variables
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list_unchop()
- unchop a list of objects
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mutate(<PlySummarizedExperiment>)
- Mutate a PlySummarizedExperiment object
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new_plyxp() PlySummarizedExperiment()
- SummarizedExperiment Shell Object
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cols() rows() col_ctx() row_ctx() assay_ctx()
- plyxp contexts
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vec_phantom() plyxp_pillar_format() show_tidy() use_show_tidy() use_show_default()
- Printing within tibble with S4 objects
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plyxp() plyxp_on()
- Modify SummarizedExperiment Object
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pull(<PlySummarizedExperiment>)
- extract data from object
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se_simple
- Plyxp Simple Example Summarized Experiment
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select(<PlySummarizedExperiment>)
- select assays, rowData, and colData names
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slice(<PlySummarizedExperiment>)
- Slice a PlySummarizedExperiment
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summarize(<PlySummarizedExperiment>) summarise(<PlySummarizedExperiment>)
- Summarize PlySummarizedExperiment
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vec_chop()
- chop a vector
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vec_recycle()
- Recycle a vector
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vec_rep() vec_rep_each()
- replicate a vector
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vec_slice()
- Get observations of a vector
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vec_group_id() vec_group_loc()
- Create Group Indices
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vec_ptype2()
- Create a common prototype of two vectors
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vec_ptype_common()
- find the common ptype
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class_vctrs class_s4_vctrs class_DF
- S7 classes for vctrs and S4 Vectors