Package index • plyxp

All functions

se() `se<-`() assays(<PlySummarizedExperiment>) `assays<-`(<PlySummarizedExperiment>,<list>) `assays<-`(<PlySummarizedExperiment>,<SimpleList>) assay(<PlySummarizedExperiment>,<missing>) assay(<PlySummarizedExperiment>,<numeric>) assay(<PlySummarizedExperiment>,<character>) `assay<-`(<PlySummarizedExperiment>,<missing>) `assay<-`(<PlySummarizedExperiment>,<numeric>) `assay<-`(<PlySummarizedExperiment>,<character>) rowData(<PlySummarizedExperiment>) `rowData<-`(<PlySummarizedExperiment>) colData(<PlySummarizedExperiment>) `colData<-`(<PlySummarizedExperiment>,<DataFrame>) `colData<-`(<PlySummarizedExperiment>,<NULL>): PlySummarizedExperiment Methods

arrange(<PlySummarizedExperiment>): arrange rows or columns of PlySummarizedExperiment

as.data.frame(<PlySummarizedExperiment>): create data.frame

.assays .assays_asis .rows .rows_asis .cols .cols_asis: contextual plyxp pronouns

filter(<PlySummarizedExperiment>): filter PlySummarizedExperiment

group_by(<PlySummarizedExperiment>) ungroup(<PlySummarizedExperiment>): apply groups to PlySummarizedExperiment

group_data(<PlySummarizedExperiment>): get grouping data

group_vars(<PlySummarizedExperiment>): get PlySummarizedExperiment grouping Variables

mutate(<PlySummarizedExperiment>): Mutate a PlySummarizedExperiment object

new_plyxp() PlySummarizedExperiment(): SummarizedExperiment Shell Object

cols() rows() col_ctx() row_ctx() assay_ctx(): plyxp contexts

vec_phantom() plyxp_pillar_format() show_tidy() use_show_tidy() use_show_default(): Printing within tibble with S4 objects

plyxp(): Modify SummarizedExperiment Object

pull(<PlySummarizedExperiment>): extract data from object

se_simple: Plyxp Simple Example Summarized Experiment

select(<PlySummarizedExperiment>): select assays, rowData, and colData names

summarize(<PlySummarizedExperiment>) summarise(<PlySummarizedExperiment>): Summarize PlySummarizedExperiment

vec_recycle(): Recycle a vector

vec_rep() vec_rep_each(): replicate a vector

vec_slice(): Get observations of a vector

class_vctrs class_s4_vctrs class_DF: S7 classes for vctrs and S4 Vectors