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A small data SummarizedExperiment Object of 20 observations, 5 rows and 4 columns.

Usage

se_simple

Format

se_simple

assays
counts

sampled data points between 1:20

logcounts

log transform of counts

rowData/.features
gene

fake gene name

length

fake gene length

direction

fake strand

colData/.samples
sample

fake sample name

condition

control or drug treatment

Value

a SummarizedExperiment object

Examples

SummarizedExperiment::assays(se_simple)
#> List of length 2
#> names(2): counts logcounts
SummarizedExperiment::rowData(se_simple)
#> DataFrame with 5 rows and 3 columns
#>              gene    length   direction
#>       <character> <integer> <character>
#> row_1          g1         1           -
#> row_2          g2        24           +
#> row_3          g3        60           +
#> row_4          g4        39           -
#> row_5          g5        37           +
SummarizedExperiment::colData(se_simple)
#> DataFrame with 4 rows and 2 columns
#>            sample   condition
#>       <character> <character>
#> col_1          s1       cntrl
#> col_2          s2       cntrl
#> col_3          s3        drug
#> col_4          s4        drug